Systematic investigation of genetic contributions of sex chromosomes to Alzheimer's disease

PROJECT SUMMARY Sex chromosomes have long been excluded in genetic and genomic research of human diseases, partially due to the technical challenges of analyzing the data from large-scale molecular profiling methods, such as next- generation sequencing (NGS). Yet their contributions are significantly implicated in the sex dimorphism of Alzheimer’s disease (AD). In this project, the team will apply a sex-chromosome-completement aware alignment approach to re-align large amounts of NGS data from large clinical cohorts of AD, for systematically investigating the genetic contributions of sex chromosomes to AD. Variants will be called based on the realignments, and both X and Y chromosomes will be specifically investigated for the variants’ associations with AD phenotypes. The team will also consider the contributions of the homologous X-Y gene pairs to gene expression and perform gene network analysis to evaluate how the expressions affect sex differences in AD. The reprocessed data will be disseminated to the public for broad use to benefit the scientific community. Taken together, the work will lay the foundation for determining the genetic components of sex chromosomes to AD and pave the way for future in-depth study of these genomic features and their implication in sexual dimorphism in AD.